IR35: when your client deducts Income Tax and National Insurance from your invoice

This article explains how FreeAgent supports IR35 rules for public and private sector contracts where your client deducts Income Tax and National Insurance (NI) contributions from the amount that you invoice and then pays these to HMRC on your behalf.

For other types of private sector contracts, please read the guidance on how FreeAgent supports IR35 when your company is required to make a deemed payment.

Please note:

  • FreeAgent's IR35 functionality won't be available if you have an unincorporated landlord account.
     
  • If you expect to work on a contract where the client deducts Income Tax and NI from your invoice, you should create a new cost category in FreeAgent for tax and NI deducted at source through IR35 rules.
     
  • You must follow the steps outlined below every time you undertake a piece of work for a client who deducts Income Tax and NI from your invoices under the IR35 rules. If you create a project in FreeAgent for these contracts, do not tick the IR35 checkbox as this only relates to contracts where your company is required to make a deemed payment.
     
  • You’ll need to have level 6 access or above to your FreeAgent account to explain and split bank transactions. You can only allocate fees or commission to bank transactions that have already been explained or are currently unexplained. It’s not possible to allocate fees or commission to transactions that have been entered manually or are in a locked period.
  • CIS deductions for subcontractors would be split when creating the invoice.

1. Create the invoice

When you complete a piece of work for a contract where the client deducts Income Tax and NI from your invoice, create the invoice in FreeAgent as normal. Select ‘Sales’ as the income category. Don't select the category that you created for tax and NI deducted at source. 

When your client pays the invoice, they will deduct Income Tax and NI contributions from the invoice amount and will pay this to HMRC on your behalf. The amount you receive will be the amount of the invoice minus the value of these Income Tax and NI contributions.

For example, if you complete work for a total of £1,200, your client will be deducting Tax and NI before paying you, so you will still create and send them an invoice for £1,200, but will receive a payment from them of £1000.

2. Split the bank transaction for charges deducted

Once the invoice has been paid and the corresponding bank transaction has appeared in your FreeAgent account (minus the Income Tax and NI contributions deducted by your client), you need to split the bank transaction to explain the amount that your client deducted from the invoice.

Navigate to the 'Banking' tab at the top of the screen and select 'Bank Accounts' from the drop-down menu.

Bank Accounts highlighted within the bank accounts drop-down menu

Select the relevant bank account in your FreeAgent account and select the payment received from your client.

Transaction highlighted on bank account page.

Navigate to the 'Adjustments' drop-down menu and select 'Fees and commissions'.

'Fees and commissions' highlighted on Adjustments drop down menu.

Enter the amount of the deduction in the 'Value' field, £200 using the example above.

Value field set to '£200'.

Select 'Other' from the category options and choose the custom category you created for tax and NI deducted at source from the drop-down menu.

Other selected on category list, with new custom category chosen.

Select 'Save and finish' at the bottom of the screen.

FreeAgent will then allocate the fees to the transaction and you can explain the remaining amount.

Select ‘Invoice Receipt’ from the 'Type' drop-down menu and choose the relevant invoice.

Type set to 'Invoice Receipt'.

Select 'Explain transaction' to complete the process.

3. Report the amount that you received to HMRC through RTI payroll

If you choose to take this money out of your company as part of your salary, the final part of the process is reporting the information to HMRC through FreeAgent’s payroll. 

To do this, you should prepare payroll for the relevant month as normal in order to generate a payslip for that month. Select the ‘Edit’ button next to the payslip and then enter the amount that your company received from your client, excluding VAT and the amount of Income Tax and NI that the client deducted, in the ‘Pay Not Subject to Tax or NI’ field. This would be £1,000 in the example above. You will pay the VAT to HMRC through your VAT return as usual.

Basic pay

The 'Basic Pay' field would only be needed if you were taking a salary from the company separately from the money your client is paying you. For example, if you were taking £1900 a month from the company and the client paid you £1000 under IR35, the payslip would contain £1900 basic pay and £1000 tax/NI free pay, which would be £2,900 in total. However, if you weren’t taking £1900 a month from the company, the payslip would only contain the £1000 tax/NI free pay. Please note that the payslip your client sends you will have different year-to-date figures as their payslip will include all the deductions.

Deduction entered in Pay Not Subject to Tax or NI on a payslip

Alternatively, if you expect to receive the same amount every month from contracts where the client deducts Income Tax and NI from your invoice, you can edit your payroll profile and enter this information in the ‘Pay Not Subject to Tax or NI’ field of the ‘Monthly Pay’ area.

Deduction entered in Pay Not Subject to Tax or NI on a payroll profile

4. Include this income on your Self Assessment Tax Return

HMRC have said that income earned in this way should be included on your tax return as if it were employment income paid to you by your client.

FreeAgent won’t do this automatically, so you’ll need to add a new set of Employment pages to your tax return and include the total income you invoiced in the tax year, excluding VAT, in box 1.

Box 1 of Employment page

Then, include the Income Tax (not the National Insurance) that your client deducted from your invoices in box 2.

Box 2 of Employment page

Finally, select 'Yes' in box 8 to show that the income was earned through an off-payroll working arrangement.

Box 8 of Employment page

Did you find this article useful?